Counterpoint: to what extent are hyperkludges actually a unique thing versus an aspect of how technologies and tools are integrated into human context? Like, one of the original examples is the TCP/IP stack, but as anyone who has had to wrangle multiple vendors can attest a lot of the value in that standardization necessarily comes from the network effects - the fact that it's an accepted standard. The web couldn't function if you had a bespoke protocol stack hand-made to elegantly handle the specific problems of a given application not just because of the difficulty in building that much software (i.e. network effects on the design and construction side) but because of how unwieldy and impractical it would be to get any of those applications in front of people. The fit of those tools for a given application is secondary to how much more cleanly the entire ecosystem can operate because they are more limited in number.

The OP also talks about how embedded the history of a given problem is in the solution which feels like the central explanation for this trend. In that sense a hyperkludge isn't a unique pattern that some things fall into and more a way of indicating a particularly noteworthy whorl in the fractal infinikludge that is all human endeavors.