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Ye fair, it all depends on what markup you have and what features you use. Personally i dont think my markup of priiloader has any weird stuff that is specific to github, but i will have to check to be honest. If there was any special stuff id try to steer away from github specifics as much as i can, because i believe and work in a way it should always be possible to take away any part of a project and replace it with something else. It makes projects very flexible to change
The real issue is the base Markdown spec is absolutely barren. Folks have tried to shoehorn Markdown into something general purpose so everyone & their brother needed to fork it to add some level of usability since base Markdown isn’t suitable for blogging, technical documentation, white papers, etc. which it was never designed to do